Skip to content

Commit a0993df

Browse files
MoiCollgrahamgower
MoiColl
authored and
grahamgower
committed
Making read depth linked calculation as a circular sequence and refining other functions such as calculating Major and minor alleles based on Genotype Likelihoods
1 parent 106a672 commit a0993df

5 files changed

Lines changed: 4293 additions & 107 deletions

File tree

‎cython_constraint.txt‎

Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1 @@
1+
Cython<3

‎notebook/simGL.ipynb‎

Lines changed: 4056 additions & 36 deletions
Large diffs are not rendered by default.

‎simGL/__init__.py‎

Lines changed: 9 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1 +1,9 @@
1-
from .simGL import incorporate_monomorphic, depth_per_haplotype, sim_allelereadcounts, allelereadcounts_to_GL, GL_to_Mm, allelereadcounts_to_pileup
1+
from .simGL import (
2+
incorporate_monomorphic,
3+
depth_per_haplotype,
4+
sim_allelereadcounts,
5+
allelereadcounts_to_GL,
6+
GL_to_Mm,
7+
subset_GL,
8+
allelereadcounts_to_pileup,
9+
)

0 commit comments

Comments
 (0)