diff --git a/.github/workflows/bench-pr.yml b/.github/workflows/bench-pr.yml index 1fab5eb28bc..313da9438da 100644 --- a/.github/workflows/bench-pr.yml +++ b/.github/workflows/bench-pr.yml @@ -109,7 +109,7 @@ jobs: echo '# Benchmarks: ${{ matrix.benchmark.name }}' > comment.md echo '' >> comment.md - uv run --no-project scripts/compare-benchmark-jsons.py base.json results.json "${{ matrix.benchmark.name }}" \ + uv run --project scripts scripts/compare-benchmark-jsons.py base.json results.json "${{ matrix.benchmark.name }}" \ >> comment.md cat comment.md >> $GITHUB_STEP_SUMMARY diff --git a/.github/workflows/bench.yml b/.github/workflows/bench.yml index ebeb429849b..2ccde1d1195 100644 --- a/.github/workflows/bench.yml +++ b/.github/workflows/bench.yml @@ -29,7 +29,7 @@ jobs: sudo apt-get update && sudo apt-get install -y jq bash scripts/commit-json.sh > new-commit.json - bash scripts/cat-s3.sh vortex-ci-benchmark-results commits.json new-commit.json + uv run --project scripts scripts/cat-s3.py vortex-ci-benchmark-results commits.json new-commit.json bench: timeout-minutes: 120 @@ -100,7 +100,7 @@ jobs: - name: Upload Benchmark Results shell: bash run: | - bash scripts/cat-s3.sh vortex-ci-benchmark-results data.json.gz results.json + uv run --project scripts scripts/cat-s3.py vortex-ci-benchmark-results data.json.gz results.json - name: Alert incident.io if: failure() diff --git a/.github/workflows/sql-benchmarks.yml b/.github/workflows/sql-benchmarks.yml index 08afe175341..fecd648d078 100644 --- a/.github/workflows/sql-benchmarks.yml +++ b/.github/workflows/sql-benchmarks.yml @@ -246,7 +246,7 @@ jobs: echo '# Benchmarks: ${{ matrix.name }}' > comment.md echo '' >> comment.md - uv run --no-project scripts/compare-benchmark-jsons.py base.json results.json "${{ matrix.name }}" \ + uv run --project scripts scripts/compare-benchmark-jsons.py base.json results.json "${{ matrix.name }}" \ >> comment.md cat comment.md >> $GITHUB_STEP_SUMMARY @@ -274,7 +274,7 @@ jobs: if: inputs.mode == 'develop' shell: bash run: | - bash scripts/cat-s3.sh vortex-ci-benchmark-results data.json.gz results.json + uv run --project scripts scripts/cat-s3.py vortex-ci-benchmark-results data.json.gz results.json - name: Alert incident.io if: failure() && inputs.mode == 'develop' diff --git a/pyproject.toml b/pyproject.toml index f0e82ec52c9..f507d17ce38 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,7 +4,7 @@ version = "0.1.0" description = "Add your description here" authors = [{ name = "Nicholas Gates", email = "nick@nickgates.com" }] requires-python = ">= 3.11" -dependencies = ["bench-orchestrator", "vortex-data", "docs"] +dependencies = ["bench-orchestrator", "vortex-data", "vortex-scripts", "docs"] [build-system] requires = ["hatchling"] @@ -32,11 +32,12 @@ managed = true required-version = ">=0.8.0" [tool.uv.workspace] -members = ["bench-orchestrator", "vortex-python", "docs"] +members = ["bench-orchestrator", "vortex-python", "scripts", "docs"] [tool.uv.sources] bench-orchestrator = { workspace = true } vortex-data = { workspace = true } +vortex-scripts = { workspace = true } docs = { workspace = true } [tool.ruff] diff --git a/scripts/cat-s3.py b/scripts/cat-s3.py new file mode 100644 index 00000000000..87a2089679e --- /dev/null +++ b/scripts/cat-s3.py @@ -0,0 +1,174 @@ +# SPDX-License-Identifier: Apache-2.0 +# SPDX-FileCopyrightText: Copyright the Vortex contributors + +"""Append JSONL benchmark results to an S3 object with duplicate-commit detection and optimistic locking.""" + +import gzip +import os +import subprocess +import sys +import tempfile +import time + +import pandas as pd + + +def head_etag(bucket: str, key: str) -> str | None: + result = subprocess.run( + [ + "aws", + "s3api", + "head-object", + "--bucket", + bucket, + "--key", + key, + "--query", + "ETag", + "--output", + "text", + ], + capture_output=True, + text=True, + ) + if result.returncode != 0: + return None + etag = result.stdout.strip() + if not etag or etag == "null": + return None + return etag + + +def get_object(bucket: str, key: str, dest: str, if_match: str) -> bool: + result = subprocess.run( + [ + "aws", + "s3api", + "get-object", + "--bucket", + bucket, + "--key", + key, + "--if-match", + if_match, + dest, + ], + ) + return result.returncode == 0 + + +def put_object(bucket: str, key: str, body: str, if_match: str) -> bool: + result = subprocess.run( + [ + "aws", + "s3api", + "put-object", + "--bucket", + bucket, + "--key", + key, + "--body", + body, + "--if-match", + if_match, + ], + ) + return result.returncode == 0 + + +def extract_commit_ids(path: str, is_gz: bool) -> set[str]: + """Extract unique commit identifiers from a JSONL file using pandas. + + Supports both benchmark data ("commit_id" column) and commit metadata ("id" column). + """ + df = pd.read_json(path, lines=True, compression="gzip" if is_gz else None) + ids: set[str] = set() + if "commit_id" in df.columns: + ids.update(df["commit_id"].dropna().unique()) + if "id" in df.columns: + ids.update(df["id"].dropna().unique()) + return ids + + +def main() -> None: + if len(sys.argv) != 4: + print(f"Usage: {sys.argv[0]} ", file=sys.stderr) + sys.exit(1) + + bucket = sys.argv[1] + key = sys.argv[2] + local_file = sys.argv[3] + max_retries = 100 + + is_gz = key.endswith(".gz") + + with open(local_file) as f: + new_data = f.read() + new_commit_ids = extract_commit_ids(local_file, is_gz=False) + + for attempt in range(1, max_retries + 1): + etag = head_etag(bucket, key) + if etag is None: + print("Failed to retrieve ETag.", file=sys.stderr) + sys.exit(1) + + local_copy = tempfile.mktemp() + try: + if not get_object(bucket, key, local_copy, etag): + print( + f"ETag mismatch during download (attempt {attempt}), retrying...", + file=sys.stderr, + ) + continue + + # Check for duplicate commits. + existing_commit_ids = extract_commit_ids(local_copy, is_gz) + duplicates = new_commit_ids & existing_commit_ids + if duplicates: + print( + f"ERROR: commit(s) {', '.join(sorted(duplicates))} already exist in " + f"s3://{bucket}/{key}. Refusing to append duplicate data.", + file=sys.stderr, + ) + sys.exit(1) + + # Decompress existing data, concatenate, recompress. + if is_gz: + with gzip.open(local_copy, "rt") as f: + existing_data = f.read() + else: + with open(local_copy) as f: + existing_data = f.read() + + combined = existing_data + new_data + output_path = tempfile.mktemp(suffix=".gz" if is_gz else "") + try: + if is_gz: + with gzip.open(output_path, "wt") as f: + f.write(combined) + else: + with open(output_path, "w") as f: + f.write(combined) + + if put_object(bucket, key, output_path, etag): + print("File updated and uploaded successfully.") + return + + print( + f"ETag mismatch during upload (attempt {attempt}), retrying...", + file=sys.stderr, + ) + time.sleep(0.1) + finally: + if os.path.exists(output_path): + os.unlink(output_path) + finally: + if os.path.exists(local_copy): + os.unlink(local_copy) + + print(f"Too many failures: {max_retries}.", file=sys.stderr) + sys.exit(1) + + +if __name__ == "__main__": + main() diff --git a/scripts/cat-s3.sh b/scripts/cat-s3.sh deleted file mode 100644 index cb9edc2a53e..00000000000 --- a/scripts/cat-s3.sh +++ /dev/null @@ -1,52 +0,0 @@ -#!/bin/bash -# SPDX-License-Identifier: Apache-2.0 -# SPDX-FileCopyrightText: Copyright the Vortex contributors - -set -Eeu -o pipefail -x - -bucket="$1" -key="$2" -local_file_to_concatenate="$3" -local_copy=$(mktemp) -local_concatenated=$(mktemp) -n_failures=0 - -while (( n_failures < 100 )); do - current_etag=$(aws s3api head-object --bucket "$bucket" --key "$key" --query ETag --output text) - if [[ "$current_etag" == "null" ]]; then - echo "Failed to retrieve ETag. Exiting." - exit 1 - fi - - aws s3api get-object --bucket "$bucket" --key "$key" --if-match "$current_etag" "$local_copy" || { - echo "ETag does not match. Trying again." - n_failures=$(( n_failures + 1 )) - continue - } - - if [[ "$key" =~ \.gz$ ]]; then - local_decompressed=$(mktemp) - local_decompressed_concat=$(mktemp) - gzip -d -c "$local_copy" > "$local_decompressed" - cat "$local_decompressed" "$local_file_to_concatenate" > "$local_decompressed_concat" - gzip -c "$local_decompressed_concat" > "$local_concatenated" - rm "$local_decompressed" "$local_decompressed_concat" - else - cat $local_copy $local_file_to_concatenate > $local_concatenated - fi - - - aws s3api put-object --bucket "$bucket" --key "$key" --body "$local_concatenated" --if-match "$current_etag" || { - echo "ETag does not match during upload. Trying again." - n_failures=$(( n_failures + 1 )) - # wait for before retrying - sleep 0.1 - continue - } - - echo "File updated and uploaded successfully." - exit 0 -done - -echo "Too many failures: $n_failures." -exit 1 diff --git a/scripts/compare-benchmark-jsons.py b/scripts/compare-benchmark-jsons.py index 44514053fad..f9bb6179670 100644 --- a/scripts/compare-benchmark-jsons.py +++ b/scripts/compare-benchmark-jsons.py @@ -1,12 +1,3 @@ -# /// script -# requires-python = ">=3.11" -# dependencies = [ -# "numpy", -# "pandas", -# "tabulate", -# ] -# /// - # SPDX-License-Identifier: Apache-2.0 # SPDX-FileCopyrightText: Copyright the Vortex contributors diff --git a/scripts/pyproject.toml b/scripts/pyproject.toml new file mode 100644 index 00000000000..fe718145c72 --- /dev/null +++ b/scripts/pyproject.toml @@ -0,0 +1,17 @@ +# SPDX-License-Identifier: Apache-2.0 +# SPDX-FileCopyrightText: Copyright the Vortex contributors + +[project] +name = "vortex-scripts" +version = "0.1.0" 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