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@BackofenLab

Bioinformatics Lab - Department of Computer Science - University Freiburg

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  1. IntaRNA IntaRNA Public

    Efficient target prediction incorporating accessibility of interaction sites

    C++ 51 28

  2. RNA-Playground RNA-Playground Public

    Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.

    JavaScript 40 15

  3. CRISPRidentify CRISPRidentify Public

    Python 32 7

  4. GGL GGL Public

    Graph Grammar Library

    C++ 27 6

  5. CRISPRcasIdentifier CRISPRcasIdentifier Public

    Machine learning for accurate identification and classification of CRISPR-Cas systems

    Python 23 6

  6. CRISPRloci CRISPRloci Public

    Python 16 6

Repositories

Showing 10 of 83 repositories
  • vaRRI Public

    Visualize any RNA-RNA interaction

    BackofenLab/vaRRI’s past year of commit activity
    Python 0 Apache-2.0 0 4 0 Updated Apr 8, 2026
  • Deep-Generative-modeling-Reveals-Multi-Phase-Regenerative-Cell-Dynamics-in-Arabidopsis-Roots Public

    Plant regeneration is a highly orchestrated process characterised by dynamic cellular reprogramming and lineage plasticity. This study presents an integrative deep generative framework to identify and characterise regenerative cell states from scRNA-seq data collected across five post-injury time points

    BackofenLab/Deep-Generative-modeling-Reveals-Multi-Phase-Regenerative-Cell-Dynamics-in-Arabidopsis-Roots’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Mar 15, 2026
  • IntaRNA Public

    Efficient target prediction incorporating accessibility of interaction sites

    BackofenLab/IntaRNA’s past year of commit activity
    C++ 51 28 30 2 Updated Feb 23, 2026
  • BackofenLab/SV_diagnostic_tool’s past year of commit activity
    Python 1 0 0 0 Updated Feb 19, 2026
  • ML_LS_resources Public

    ML in Life Science resources - hands-on lectures, hands-on exercise solutions

    BackofenLab/ML_LS_resources’s past year of commit activity
    Jupyter Notebook 3 3 0 0 Updated Jan 30, 2026
  • BackofenLab/BioinformaticsI-pages’s past year of commit activity
    JavaScript 0 1 0 0 Updated Jan 22, 2026
  • BackofenLab/De-novo-design-of-antibacterial-cell-penetrating-peptides-using-structure-aware-generative-modelling’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 4, 2026
  • BackofenLab/An-AI-Guided-Liver-Metastasis-Atlas-Links-Tumor-Invasion-Programs-to-Invasive-Trophoblast-Signatures’s past year of commit activity
    Python 0 0 0 0 Updated Dec 22, 2025
  • AxoWise Public

    An integrated graph system of biological entities, functional terms, and publications.

    BackofenLab/AxoWise’s past year of commit activity
    Vue 6 Apache-2.0 1 16 0 Updated Sep 12, 2025
  • V_RNA-pages Public
    BackofenLab/V_RNA-pages’s past year of commit activity
    JavaScript 0 0 0 0 Updated Jul 3, 2025

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