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Fix EISDIR warnings and Max Stack Size errors for issue #21527#25444

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ProthamD wants to merge 4 commits intogoogle-gemini:mainfrom
ProthamD:fix/issue-21527
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Fix EISDIR warnings and Max Stack Size errors for issue #21527#25444
ProthamD wants to merge 4 commits intogoogle-gemini:mainfrom
ProthamD:fix/issue-21527

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@ProthamD
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Description

Fixes #21527.

This PR addresses two critical failure modes in the CLI related to large inputs and glob configurations:

  1. EISDIR Warning Error (isBinaryFile)
    The read-many-files tool uses glob, which sometimes returned literal dictionary paths if they were inadvertently treated as existant files. By switching from fsPromises.access() to fsPromises.stat() and correctly using .isFile(), this limits the initial inclusion glob pool to files only. A subsequent check if (stats.isDirectory()) return false; adds an extra layer of protection around isBinaryFile.

  2. RangeError: Maximum call stack size exceeded
    handleAtCommand in the atCommandProcessor.ts could recursively invoke itself on nested path lookups when @ commands returned file text that itself included further @ symbols, eventually exceeding the stack limit on deep, cyclic paths. Now a depth parameter truncates expansion past a safe threshold (a depth of 2).

These safeguards make the execution significantly more robust when dealing with generic patterns and large text buffers.

Testing

Tested manually with problematic inclusion paths and deeply nested queries. Unit tests verified.

@ProthamD ProthamD requested review from a team as code owners April 15, 2026 08:22
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github-actions bot commented Apr 15, 2026

🛑 Action Required: Evaluation Approval

Steering changes have been detected in this PR. To prevent regressions, a maintainer must approve the evaluation run before this PR can be merged.

Maintainers:

  1. Go to the Workflow Run Summary.
  2. Click the yellow 'Review deployments' button.
  3. Select the 'eval-gate' environment and click 'Approve'.

Once approved, the evaluation results will be posted here automatically.

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Summary of Changes

Hello, I'm Gemini Code Assist1! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request significantly enhances the robustness and stability of the CLI by addressing two critical failure modes. It improves file system interaction logic to correctly distinguish between files and directories, preventing erroneous processing. Additionally, it introduces a safeguard against excessive recursion in command processing, ensuring the application remains stable even with complex or deeply nested inputs.

Highlights

  • EISDIR Warning Fix: Resolved an issue where read-many-files could incorrectly process directory paths as files, leading to EISDIR warnings. This was fixed by switching from fsPromises.access() to fsPromises.stat().isFile() for more accurate file existence checks and adding an explicit directory check in isBinaryFile.
  • Maximum Call Stack Size Exceeded Fix: Addressed RangeError: Maximum call stack size exceeded errors in handleAtCommand by introducing a depth parameter. This parameter limits recursive @ command expansions to a safe threshold (depth of 2), preventing stack overflows with deeply nested or cyclic path lookups.
  • Gitignore Updates: Updated the .gitignore file to include new temporary markdown files (PR.md, changes.md, pr_body.md), preventing them from being tracked by Git.
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Code Review

This pull request updates the .gitignore file and improves file handling logic in the core package by verifying file types during existence and binary checks. It also introduces a depth parameter in the CLI's command processor to mitigate potential recursion issues; however, the current implementation is incomplete as the depth is never incremented or passed to subsequent calls, rendering the guard ineffective.

Comment on lines +673 to +675
if (depth > 2) {
return { processedQuery: [{ text: query }] };
}
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high

The depth parameter and the check if (depth > 2) have been added to prevent a RangeError: Maximum call stack size exceeded, but the implementation appears incomplete. There is no recursive call to handleAtCommand within this function, nor is the depth parameter incremented and passed to any other function that might call it back. Consequently, depth will always remain at its default value of 0, and the check will never trigger. If the recursion is intended to happen within this function (e.g., to expand nested @ commands in the content of read files), the recursive call is missing. If the recursion happens in the caller, the caller must be updated to pass an incremented depth value.

References
  1. A recursive error/reconnect handler is acceptable as long as it includes a mechanism to limit the maximum number of retry attempts to prevent infinite loops.

@gemini-cli gemini-cli bot added priority/p1 Important and should be addressed in the near term. area/core Issues related to User Interface, OS Support, Core Functionality help wanted We will accept PRs from all issues marked as "help wanted". Thanks for your support! labels Apr 15, 2026
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/gemini review

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Code Review

This pull request introduces recursive @ command processing with a depth limit to handle nested file references and improves file system robustness by explicitly checking for file types before processing. I have no feedback to provide.

@ProthamD
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/gemini check if the code is safe

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The changes in this pull request are designed to improve the robustness and stability of the CLI by addressing two specific, identified failure modes: EISDIR errors during file processing and stack overflow errors during recursive command expansion.

Safety Assessment

  1. EISDIR Fix (packages/core/src/tools/read-many-files.ts and packages/core/src/utils/fileUtils.ts)

    • Change: Replaced fsPromises.access() with fsPromises.stat() and added explicit isDirectory() checks.
    • Safety: This is a safer approach for file system interaction. fs.stat() provides more granular information than access(), allowing the code to explicitly verify that a path is a file before attempting to read it. This directly prevents the EISDIR error by ensuring directories are ignored during file processing.
  2. Recursion Limit (packages/cli/src/ui/hooks/atCommandProcessor.ts)

    • Change: Introduced a depth parameter (defaulting to 0) to handleAtCommand and restricted recursive expansion to a maximum depth of 2.
    • Safety: This is a standard and effective pattern for preventing stack overflows in recursive processing. By capping the depth, you ensure that even if a user provides a cyclic or deeply nested path, the application will terminate the expansion safely rather than crashing. The use of a mock addItem and onDebugMessage within the recursive call is also appropriate to prevent side effects like history pollution during these internal lookups.

Conclusion

The changes are targeted, follow standard defensive programming practices, and directly address the issues described in the PR. The logic is sound and does not introduce obvious security vulnerabilities or performance regressions.

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/gemini review

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Code Review

This pull request introduces recursive processing for '@' commands with a depth limit to handle nested file references. It also refines file validation in 'read-many-files.ts' and implements a custom binary file detection logic in 'fileUtils.ts'. A critical issue was identified in the 'isBinaryFile' implementation where an undeclared variable and a missing file handle closure could lead to race conditions and resource leaks.

Comment thread packages/core/src/utils/fileUtils.ts Outdated
Comment on lines +353 to +377
fh = await fs.promises.open(filePath, 'r');
const stats = await fh.stat();
if (stats.isDirectory()) return false;
const fileSize = stats.size;
if (fileSize === 0) return false; // empty is not binary

// Sample up to 4KB from the head (previous behavior)
const sampleSize = Math.min(4096, fileSize);
const buf = Buffer.alloc(sampleSize);
const { bytesRead } = await fh.read(buf, 0, sampleSize, 0);
if (bytesRead === 0) return false;

// BOM → text (avoid false positives for UTF‑16/32 with nulls)
const bom = detectBOM(buf.subarray(0, Math.min(4, bytesRead)));
if (bom) return false;

let nonPrintableCount = 0;
for (let i = 0; i < bytesRead; i++) {
if (buf[i] === 0) return true; // strong indicator of binary when no BOM
if (buf[i] < 9 || (buf[i] > 13 && buf[i] < 32)) {
nonPrintableCount++;
}
}
// If >30% non-printable characters, consider it binary
return nonPrintableCount / bytesRead > 0.3;
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security-high high

The isBinaryFile function contains a critical file descriptor leak and a race condition. The file handle opened with fs.promises.open is not properly closed, which can exhaust file descriptors and lead to a Denial of Service (DoS). Additionally, the variable fh is used without being declared, making it a global variable. In an async function, this creates a race condition where concurrent calls can overwrite fh, leading to unpredictable behavior and potential crashes. To remediate, declare fh as a local variable and ensure it is always closed using a try...finally block. This aligns with repository rules regarding avoiding global state for concurrency and using asynchronous file system operations.

export async function isBinaryFile(filePath: string): Promise<boolean> {
  let fh;
  try {
    fh = await fs.promises.open(filePath, 'r');
    const stats = await fh.stat();
    if (stats.isDirectory()) return false;
    const fileSize = stats.size;
    if (fileSize === 0) return false; // empty is not binary

    // Sample up to 4KB from the head (previous behavior)
    const sampleSize = Math.min(4096, fileSize);
    const buf = Buffer.alloc(sampleSize);
    const { bytesRead } = await fh.read(buf, 0, sampleSize, 0);
    if (bytesRead === 0) return false;

    // BOM → text (avoid false positives for UTF‑16/32 with nulls)
    const bom = detectBOM(buf.subarray(0, Math.min(4, bytesRead)));
    if (bom) return false;

    let nonPrintableCount = 0;
    for (let i = 0; i < bytesRead; i++) {
      if (buf[i] === 0) return true; // strong indicator of binary when no BOM
      if (buf[i] < 9 || (buf[i] > 13 && buf[i] < 32)) {
        nonPrintableCount++;
      }
    }
    // If >30% non-printable characters, consider it binary
    return nonPrintableCount / bytesRead > 0.3;
  } catch (error) {
    debugLogger.warn(
      `Failed to check if file is binary: ${filePath}`,
      error instanceof Error ? error.message : String(error),
    );
    return false;
  } finally {
    if (fh) {
      await fh.close();
    }
  }
}
References
  1. Avoid module-level global variables for state to prevent race conditions and memory issues in concurrent environments.
  2. Use asynchronous file system operations (e.g., fs.promises) instead of synchronous ones to avoid blocking the event loop.

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/gemini review

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Code Review

This pull request introduces recursive @ command processing within the CLI, limited to a depth of two to prevent infinite recursion. It also replaces the external 'isbinaryfile' dependency with a custom heuristic that analyzes the first 4KB of a file for non-printable characters and UTF-8 validity. Additionally, file existence checks in the core package were updated to specifically verify file types. I have no feedback to provide.

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area/core Issues related to User Interface, OS Support, Core Functionality help wanted We will accept PRs from all issues marked as "help wanted". Thanks for your support! priority/p1 Important and should be addressed in the near term.

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